EnrichmentMap
docs/2.2

User Guide

  • Installing
  • Quick Start Guide
  • File Formats
  • Tips on Parameter Choice
  • Interfaces
  • Attributes
  • Additional Features
  • EnrichmentMap Gene Sets
  • Tutorials
    • GSEA Tutorial
    • GSEA Tutorial - GSEA Interface
    • DAVID Tutorial
    • Generic Tutorial
    • BiNGO Tutorial
    • g:Profiler Tutorial
    • GREAT Tutorial
    • Post Analysis Tutorial
  • collapse_ExpressionMatrix.py

Links

  • Baderlab.org
  • Baderlab genesets collections
  • Cytoscape.org
  • Cytoscape App Store
  • GitHub
EnrichmentMap
  • Docs »
  • Tutorials
  • Edit on GitHub

TutorialsΒΆ

  • GSEA Tutorial
    • Files
    • Step 1: Generate GSEA output files
    • Step 2: Generate Enrichment Map with GSEA Output
    • Step 3: Examining Results
    • More Tutorials
  • GSEA Tutorial - GSEA Interface
    • Files
    • Step 1: Generate GSEA output files
    • Step 2: Generate Enrichment Map
    • Step 3: Examining Results
    • More Tutorials
  • DAVID Tutorial
    • Files
    • Step 1: Generate DAVID output files
    • Step 2: Generate Enrichment Map with DAVID Output
    • Step 3: Examining Results
  • Generic Tutorial
    • Files
  • BiNGO Tutorial
    • Files
    • Step 1: Generate BiNGO output files
    • Step 2: Generate Enrichment Map with BiNGO Output
    • Step 3: Examining Results
  • g:Profiler Tutorial
    • Files
    • Step 1: Generate g:Profiler output files
    • Step 2: Generate Enrichment Map with g:Profiler Output
    • Step 3: Examining Results
  • GREAT Tutorial
    • Files
    • Step 1: Generate GREAT output files
    • Step 1B (Optional): Generate Gene to region association file
    • Step 2: Generate Enrichment Map with GREAT Output
    • Step 3: Filtering GREAT results
    • Step 4: Examining Results
  • Post Analysis Tutorial
    • Outline
    • Instructions
    • Examining Results
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© Copyright 2018, Ruth Isserlin, Mike Kucera, Christian Lopes. Revision 5067393f.

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