Installation

Download and install the latest version of Cytoscape at

http://www.cytoscape.org/download.html

EnrichmentMap can be installed from the Cytoscape App Store at

http://apps.cytoscape.org/apps/enrichmentmap

It is recommended to install the EnrichmentMap Pipeline Collection.

This will install EnrichmentMap as well as a suite of other apps that work well with EnrichmentMap,

including AutoAnnotate, WordCloud and clusterMaker2.

https://apps.cytoscape.org/apps/enrichmentmappipelinecollection

It is also recommended to install yFiles Layout Algorithms. When this app is installed

it will be used for the default layout algorithm.

https://apps.cytoscape.org/apps/yfileslayoutalgorithms