What’s New¶

EnrichmentMap 3.1¶

Redesigned Post-Analysis UI
- Ability to preview signature gene sets before import
- Ability to import GMT files from the web (download.baderlab.org)
New Chart: Color by DataSet.
Support for g:profiler 2-phenotype analysis.
Heat Map: Compress expressions by class.
Export Legend to PDF.
Export Heat Map to PDF.
Ability to specify the name of the EnrichmentMap network.
Drag-and-Drop folders onto the Create EnrichmentMap Dialog.
Several bug fixes
Requires Cytoscape 3.5.1

EnrichmentMap 3.0 is a major release, with the following new features:

EnrichmentMap networks can now be created from any number of enrichment data sets (EnrichmentMap 2.0 supported maximum 2 data sets).
New chart visualizations on nodes for visualizing NES scores, p-values or q-values. Three new charts are available: radial heat-map, linear heat-map and heat-strips.
New network creation dialog has the ability to scan a folder for files belonging to each dataset. In most cases this removes the need to manually enter the required files.
New control panel allows the contents and style of the network and charts to be updated dynamically.
New legend dialog.
New streamlined HeatMap panel has the ability to summarize expression data.
Several new commands that allow EnrichmentMap to be automated from external scripts and CyREST.
Several bug fixes
Requires Cytoscape 3.4